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Peter Rice

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Activity overview

Latest activity by Peter Rice
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    Peter Rice created an article,

    Glowing Bear User Interface - April 2019

    The i2b2 tranSMART Foundation organizes monthly training sessions which can be found on their website, at http://transmartfoundation.org/training_recordings/. This webpage also includes i2b2 and i2...

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    Peter Rice created an article,

    TranSMART: Complex Clinical Datasets - March 2019

    The i2b2 tranSMART Foundation organizes monthly training sessions which can be found on their website, at http://transmartfoundation.org/training_recordings/. This webpage also includes i2b2 and i2...

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    Peter Rice created an article,

    TransmartApp Services Source Code

    transmart/mydas/This article documents the internal grails services in the transmartApp source code. Services are invoked by Controllers to perform business logic, operate on multiple domain object...

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    Peter Rice created an article,

    TransmartApp Controllers Source Code

    This article documents the Grails controllers available in transmartApp and the other plugins. transmartApp Controller Used By Description AccessLog     Analysis     AuthUser     AuthU...

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    Peter Rice created an article,

    TransmartApp Pages and Templates Source Code

    In transmartApp pages are defined in grails code as "Groovy Server Pages" (GSP) in files in the grails-app/view path with the extension ".gsp" . Components of these pages can be defined in GSP temp...

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    Peter Rice created an article,

    Kettle Jobs Overview

    The main Kettle jobs (.kjb files) and their underlying tasks are summarized in this article. They have diverged in earlier releases, and will be brought back to a common approach in tranSMART 16.4 ...

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    Peter Rice created an article,

    Installing the R Server for tranSMART

    The Advanced Workflows analysis workflows work by collecting the data selected in the Analyze tab and launching one of the R workflows provided by sending it to an Rserve instance. Although you can...

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    Peter Rice commented,

    Official comment

    This was answered in further email exchanges with the original user. The README for transmart-data already has a description of the issues. We can improve the scripts to help users to identify and ...

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    Peter Rice commented,

    Official comment

    The error message comes from the first check after database creation. There was an error in creating the tablespace directories. The install scripts will be updated to produce a better error messag...

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    Peter Rice created an article,

    Installing tranSMART on a clean Ubuntu system

    Scripts are available to install tranSMART 16.3 using a postgres database on a clean system (e.g. an Amazon Web Services AWS instance) running Ubuntu 14.04 or Ubuntu 16.04. The instructions below a...