Dictionary data
Loaders are available for the most useful dictionaries for searching and linking data in tranSMART.
Some datasets (e.g. KEGG) can only be used with an appropriate license.
The scripts use the loader in tranSMART-ETL which has been tested on both Postgres and Oracle.
| Dictionary | Description | Source | Load script | Download |
| Entrez Gene Info | Entrez gene names and IDs | Imperial | load-entrez.sh | Human and mouse genes |
| MeSH | Medline search terms | Imperial | load-mesh.sh | MeSH terms |
| KEGG | KEGG Pathways | Imperial | load-kegg.sh | Last public release |
| UniProt | UniProt / SwissProt human | Imperial |
load-uniprot.sh load-uniprot-sprot.sh |
Human swissprot |
| MiRBase | MiRBase | Imperial | load-mirbase.sh | MiRBase |
| Gene Ontology | Gene Ontology | Imperial | load-go.sh | Gene Ontology |
| HMDB | Human metabolite database | Imperial | load-hmdb.sh | HMDB |
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